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Publications 2006 - 2008

Publications by members of the Enteric Virus Unit 2006-2009

  1. Xerry J, Gallimore CI, Iturriza Gomara M, Allen DJ, Gray JJ. Transmission Events Within Outbreaks of Gastroenteritis Determined Through the Analysis of Nucleotide Sequences of the P2 Domain of Genogroup II Noroviruses Journal of Clinical Microbiology 2008;46:947-53.
  2. Williams CJ, Gray J, Pebody RG, Lobanov A. Survey of rotavirus surveillance, laboratory capacity and disease burden in the eastern part of the WHO European Region. EuroSurveillance 2008;13.
  3. Vesikari T, Van Damme P, Giaquinto C, Gray J, Mrukowicz J, Dagan R, Guarino A, Szajewska H, Usonis V. European Society for Paediatric Infectious Diseases/European Society for Paediatric Gastroenterology, Hepatology, and Nutrition evidence-based recommendations for rotavirus vaccination in Europe. Journal of Pediatric Gastroenterology and Nutrition 2008;46 Suppl 2:S38-48.
  4. Vesikari T, Van Damme P, Giaquinto C, Gray J, Mrukowicz J, Dagan R, Guarino A, Szajewska H, Usonis V. European Society for Paediatric Infectious Diseases/European Society for Paediatric Gastroenterology, Hepatology, and Nutrition evidence-based recommendations for rotavirus vaccination in Europe: executive summary. Journal of Pediatric Gastroenterology and Nutrition 2008;46:615-8.
  5. Simmonds MK, Armah G, Asmah R, Banerjee I, Damanka S, Esona M, Gentsch JR, Gray JJ, Kirkwood C, Page N, Iturriza-Gomara M. New oligonucleotide primers for P-typing of rotavirus strains: Strategies for typing previously untypeable strains. Journal of Clinical Virology 2008;42:368-73.
  6. Montes M, Iturriza-Gomara M. Molecular methods for the diagnosis of acute viral gastroenteritis. Enfermedades Infecciosas Microbiologia Clinica 2008;26:81-5.
  7. Matthijnssens J, Ciarlet M, Rahman M, Attoui H, Banyai K, Estes MK, Gentsch JR, Iturriza-Gomara M, Kirkwood CD, Martella V, Mertens PP, Nakagomi O, Patton JT, Ruggeri FM, Saif LJ, Santos N, Steyer A, Taniguchi K, Desselberger U, Van Ranst M. Recommendations for the classification of group A rotaviruses using all 11 genomic RNA segments. Archives of Virology 2008;153:1621-9.
  8. Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, McDonald SM, Palombo EA, Iturriza-Gomara M, Maes P, Patton JT, Rahman M, Van Ranst M. Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. Journal of Virology 2008;82:3204-19.
  9. Lorgelly PK, Joshi D, Iturriza Gomara M, Gray J, Mugford M. Exploring the cost effectiveness of an immunization programme for rotavirus gastroenteritis in the United Kingdom. Epidemiology and Infection 2008;136:44-55.
  10. Lorgelly PK, Joshi D, Iturriza Gomara M, Flood C, Hughes CA, Dalrymple J, Gray J, Mugford M. Infantile gastroenteritis in the community: a cost-of-illness study. Epidemiology and Infection 2008;136:34-43.
  11. Kroneman A, Verhoef L, Harris J, Vennema H, Duizer E, van Duynhoven Y, Gray J, Iturriza M, Bottiger B, Falkenhorst G, Johnsen C, von Bonsdorff CH, Maunula L, Kuusi M, Pothier P, Gallay A, Schreier E, Hohne M, Koch J, Szucs G, Reuter G, Krisztalovics K, Lynch M, McKeown P, Foley B, Coughlan S, Ruggeri FM, Di Bartolo I, Vainio K, Isakbaeva E, Poljsak-Prijatelj M, Grom AH, Mijovski JZ, Bosch A, Buesa J, Fauquier AS, Hernandez-Pezzi G, Hedlund KO, Koopmans M. Analysis of integrated virological and epidemiological reports of norovirus outbreaks collected within the foodborne Viruses in Europe network from 1-7-2001 to 30-6-2006. Journal of Clinical Microbiology 2008.
  12. Kroneman A, Harris J, Vennema H, Duizer E, van Duynhoven Y, Gray J, Iturriza M, Bottiger B, Falkenhorst G, Johnsen C, von Bonsdorff CH, Maunula L, Kuusi M, Pothier P, Gallay A, Schreier E, Koch J, Szucs G, Reuter G, Krisztalovics K, Lynch M, McKeown P, Foley B, Coughlan S, Ruggeri FM, Di Bartolo I, Vainio K, Isakbaeva E, Poljsak-Prijatelj M, Grom AH, Bosch A, Buesa J, Fauquier AS, Hernandez-Pezzi G, Hedlund KO, Koopmans M. Data quality of 5 years of central norovirus outbreak reporting in the European Network for food-borne viruses. Journal of Public Health 2008;30:82-90.
  13. Iturriza-Gomara MI, Simpson R, Perault AM, Redpath C, Lorgelly P, Joshi D, Mugford M, Hughes CA, Dalrymple J, Desselberger U, Gray J. Structured surveillance of infantile gastroenteritis in East Anglia, UK: incidence of infection with common viral gastroenteric pathogens. Epidemiology and Infection 2008;136:23-33.
  14. Iturriza-Gomara M, Xerry J, Gallimore CI, Dockery C, Gray J. Evaluation of the Loopamp((R)) (loop-mediated isothermal amplification) kit for detecting Norovirus RNA in faecal samples. Journal of Clinical Virology 2008;42:389-93.
  15. Gray J, Vesikari T, Van Damme P, Giaquinto C, Mrukowicz J, Guarino A, Dagan R, Szajewska H, Usonis V. Rotavirus. Journal of Pediatric Gastroenterology and Nutrition 2008;46 Suppl 2:S24-31.
  16. Gladstone BP, Muliyil J, Jaffar S, Wheeler JG, Lefevre AM, Iturriza-Gomara M, Gray JJ, Bose A, Estes MK, Brown DW, Kang G. Infant morbidity in an Indian slum birth cohort. Archive of Diseases in Childhood 2008;93:479-84.
  17. Gladstone BP, Iturriza-Gomara M, Ramani S, Monica B, Banerjee I, Brown DW, Gray JJ, Muliyil J, Kang G. Polymerase chain reaction in the detection of an 'outbreak' of asymptomatic viral infections in a community birth cohort in south India. Epidemiology and Infection 2008;136:399-405.
  18. Gallimore CI, Taylor C, Gennery AR, Cant AJ, Galloway A, Xerry J, Adigwe J, Gray JJ. Contamination of the Hospital Environment with Gastroenteric Viruses: Comparison of Two Paediatric Wards over a Winter Season. Journal of Clinical Microbiology 2008;46:3112-5.
  19. Desselberger U, Gray J, J. Rotaviruses. In: Tidona C, Darai G, editors. Springer Index of Viruses, 2nd ed. Heidelberg: Springer Veralg; 2008.
  20. Desselberger U, Gray J, J. Rotaviren. In: Doerr HW, Gerlich WH, Thieme G, editors. Medizinische Vorolgie, Stuttgart: Verlag KG; 2008.
  21. Bible JM, Iturriza-Gomara M, Megson B, Brown D, Pantelidis P, Earl P, Bendig J, Tong CY. Molecular epidemiology of Human Enterovirus 71 in the United Kingdom from 1998 to 2006. Journal of Clinical Microbiology 2008;46:3192-200.
  22. Banerjee I, Primrose Gladstone B, Iturriza-Gomara M, Gray JJ, Brown DW, Kang G. Evidence of intrafamilial transmission of rotavirus in a birth cohort in South India. Journal of Medical Virology 2008;80:1858-63.
  23. Bailey MS, Gallimore CI, Lines LD, Green AD, Lopman BA, Gray JJ, Brown DWG. Viral Gastroenteritis Outbreaks in Deployed British Troops During 2002-7. Journal of the Royal Army Medical Corps 2008;154:156-9.
  24. Allen DJ, Gray JJ, Gallimore CI, Xerry J, Iturriza Gomara M. Analysis of Amino Acid Variation in the P2 Domain of Norovirus VP1 Protein Reveals Putative Variant-Specific Epitopes. PLOS One 2008;3:1-9.
  25. Showell D, Sundkvist T, Reacher M, Gray J. Norovirus outbreak associated with canteen salad in Suffolk, United Kingdom. EuroSurveillance 2007;12:14-7.
  26. Rodrigues F, Iturriza M, Gray J, Januario L, Lemos L. Epidemiology of rotavirus in Portugal: G9 as a major cause of diarrhoea in non-hospitalised children. Journal of Clinical Virology 2007;40:214-7.
  27. Ramani S, Banerjee I, Primrose Gladstone B, Sarkar R, Selvapandian D, Le Fevre AM, Jaffar S, Iturriza-Gomara M, Gray JJ, Estes MK, Brown DW, Kang G. Geographic information systems and genotyping in identification of rotavirus g12 infections in residents of an urban slum with subsequent detection in hospitalized children: emergence of g12 genotype in South India. Journal of Clinical Microbiology 2007;45:432-7.
  28. Rahman M, Matthijnssens J, Yang X, Delbeke T, Arijs I, Taniguchi K, Iturriza-Gomara M, Iftekharuddin N, Azim T, Van Ranst M. Evolutionary history and global spread of the emerging G12 human rotaviruses. Journal of Virology 2007;81:2382-90.
  29. Monica B, Ramani S, Banerjee I, Primrose B, Iturriza-Gomara M, Gallimore CI, Brown DW, M F, Moses PD, Gray JJ, Kang G. Human caliciviruses in symptomatic and asymptomatic infections in children in Vellore, South India. Journal of Medical Virology 2007;79:544-51.
  30. Iturriza-Gomara M, Gallimore CI, Gray J. Gastroenteric Viruses. In: Simjee S, editor. Foodborne Diseases, New Jersey: Humana Press Inc.; 2007, pp. 215-32.
  31. Gray JJ, Kohli E, Ruggeri F, Vennema H, Sanchez-Fauquier A, Schreier E, Gallimore CI, Iturriza Gomara M, Giraudon H, Pothier P, Di Bartolo I, Inglese N, de Bruin E, van der Veer B, Moreno S, Montero V, Mari ML, Hohne M, Diedrich SM. European Multi-Centre Evaluation of Commercial Enzyme Immunoassays for Detecting Norovirus Antigen in Faecal Samples. Clinical and Vaccine Immunology 2007;14:1349-55.
  32. Gallimore CI, Iturriza-Gomara M, Xerry J, Adigwe J, Gray J, J. Inter-Seasonal Diversity of Norovirus Genotypes: Emergence and Selection of Virus Variants. Archives of Virology 2007;152:1295-303.
  33. Farahtaj F, Gallimore CI, Iturriza-Gomara M, Taremi M, Zali MR, Edalatkhah H, Fayaz A, Gray JJ. Rotavirus VP7, VP4 and VP6 genotypes co-circulating in Tehran, Iran, between 2003 and 2004. Epidemiology and Infection 2007;135:834-8.
  34. De Grazia S, Martella V, Giammanco GM, Gomara MI, Ramirez S, Cascio A, Colomba C, Arista S. Canine-origin G3P[3] rotavirus strain in child with acute gastroenteritis. Emerging Infectious Diseases 2007;13:1091-3.
  35. Banyai K, Deak J, Gray J, Iturriza-Gomara M, Kovacs J, Konya J, Laszlo B, Martella V, Meszner Z, Mihaly I, Molnar P, Nyul Z, Patri L, Schneider F, Toth A, Szucs G. EuroRotaNet - European rotavirus strain surveillance network has been established. Orvosi Hetilap 2007;148:2043-5.
  36. Banerjee I, Ramani S, Primrose B, Iturriza-Gomara M, Gray JJ, Brown DW, Kang G. Modification of rotavirus multiplex RT-PCR for the detection of G12 strains based on characterization of emerging G12 rotavirus strains from South India. Journal of Medical Virology 2007;79:1413-21.
  37. Banerjee I, Iturriza-Gomara M, Rajendran P, Primrose B, Ramani S, Gray JJ, Brown DW, Kang G. Molecular characterization of G11P[25] and G3P[3] human rotavirus strains associated with asymptomatic infection in South India. Journal of Medical Virology 2007;79:1768-74.
  38. Banerjee I, Gladstone BP, Le Fevre AM, Ramani S, Iturriza-Gomara M, Gray JJ, Brown DW, Estes MK, Muliyil JP, Jaffar S, Kang G. Neonatal Infection with G10P[11] Rotavirus Did Not Confer Protection against Subsequent Rotavirus Infection in a Community Cohort in Vellore, South India. Journal of Infectious Diseases 2007;195:625-32.
  39. Appleton H, Banks M, Dentinger CM, Teo CG. Foodborne Viral Hepatitis. In: Simjee S, editor. Foodborne Diseases, New Jersey: Humana Press Inc.; 2007, pp. 175-214.
  40. Amar CF, East CL, Gray J, Iturriza-Gomara M, Maclure EA, McLauchlin J. Detection by PCR of eight groups of enteric pathogens in 4,627 faecal samples: re-examination of the English case-control Infectious Intestinal Disease Study (1993-1996). European Journal of Clinical Microbiology and Infectious Diseases 2007;26:311-23.
  41. Van Damme P, Van der Wielen M, Ansaldi F, Desgrandchamps D, Domingo JD, Sanchez FG, Gray J, Haditsch M, Johansen K, Lorgelly P, Lorrot M, Parez N, Reschke V, Rose M. Rotavirus vaccines: considerations for successful implementation in Europe. Lancet Infectious Diseases 2006;6:805-12.
  42. Sanchez-Fauquier A, Montero V, Moreno S, Sole M, Colomina J, Iturriza-Gomara M, Revilla A, Wilhelmi I, Gray J. Human rotavirus G9 and G3 as major cause of diarrhea in hospitalized children, Spain. Emerging Infectious Diseases 2006;12:1536-41.
  43. Martella P, Banyai K, Ciarlet M, Iturriza-Gomara M, Lorusso E, De Grazia S, Arista S, Decaro N, Elia G, Cavalli A, Corrente M, Lavazza A, Baselga R, Buonavoglia C. Relationships among porcine and human P[6] rotaviruses: Evidence that the different human P[6] lineages have originated from multiple interspecies transmission events. Virology 2006;344:509-19.
  44. Maple PA, Gray J, Breuer J, Kafatos G, Parker S, Brown D. Performance of a time-resolved fluorescence immunoassay for measuring varicella-zoster virus immunoglobulin G levels in adults and comparison with commercial enzyme immunoassays and Merck glycoprotein enzyme immunoassay. Clinical and Vaccine Immunology 2006;13:214-8.
  45. Lopman BA, Gallimore C, Gray JJ, Vipond IB, Andrews N, Sarangi J, Reacher M, Brown DW. Linking healthcare associated norovirus outbreaks: A molecular epidemiologic method for investigating transmission. BMC Infectious Diseases 2006;6:1-11.
  46. Leoni F, Gallimore CI, Green J, McLauchlin J. Characterisation of small double stranded RNA element in Cryptosporidium hominis, Cryptosporidium felis and Cryptosporidium meleagridis. Parasitology International 2006;55:299-306.
  47. Iturriza-Gomara M, Megson B, Gray J, J. Molecular detection and characterization of human enteroviruses directly from clinical samples using RT-PCR and DNA sequencing. Journal of Medical Virology 2006;78:243-53.
  48. Gallimore CI, Taylor C, Gennery AR, Cant AJ, Galloway A, Iturriza-Gomara M, Gray JJ. Environmental Monitoring for Gastroenteric Viruses in a Primary Immunodeficiency Unit. Journal of Clinical Microbiology 2006;44:395-9.
  49. Gallimore CI, Iturriza-Gomara M, Lewis D, Cubitt D, Cotterill H, Gray JJ. Characterisation of sapoviruses collected in the United Kingdom from 1989-2004. Journal of Medical Virology 2006;78:673-82.
  50. Curry A, Appleton H, Dowsett B. Application of transmission electron microscopy to the clinical study of viral and bacterial infections: present and future. Micron 2006;37:91-106.
  51. Banerjee I, Ramani S, Primrose B, Moses P, Iturriza-Gomara M, Gray JJ, Jaffar S, Monica B, Muliyil JP, Brown DW, Estes MK, Kang G. Comparative study of the epidemiology of rotavirus in children from a community-based birth cohort and a hospital in South India. Journal of Clinical Microbiology 2006;44:2468-74.
  52.  Armah GE, Gallimore CI, Binka FN, Asmah RH, Green J, Ugoji U, Anto F, Brown DWG, Gray J, J. Characterisation of Norovirus Strains in Rhural Ghanaian Children with Acute Gastroenteritis. Journal of Medical Virology 2006;78:1480-5.

Publications by members of the HIV group in 2008

  1. Grover D, Copas A, Green H, Edwards SG, Dunn DT, Sabin C, Phillips A, Allen E, and Pillay D. What is the risk of mortality following diagnosis of multidrug-resistant HIV-1? J.Antimicrob.Chemother. 2008, 61:705-13.
  2. Gupta R, Hill A, Sawyer AW, and Pillay D. Emergence of drug resistance in HIV type 1-infected patients after receipt of first-line highly active antiretroviral therapy: a systematic review of clinical trials. Clin.Infect.Dis. 2008, 47:712-722.
  3. Hirsch MS, Gunthard HF, Schapiro JM, Brun-Vezinet F, Clotet B, Hammer SM, Johnson VA, Kuritzkes DR, Mellors JW, Pillay D, Yeni PG, Jacobsen DM, and Richman DD. Antiretroviral Drug Resistance Testing in Adult HIV-1 Infection: 2008
  4. Recommendations of an International AIDS Society-USA Panel. Clin.Infect.Dis. 2008, 47:266-85.
    Moses SE, Tosswill J, Sudhanva M, Poulton M, and Zuckerman M. HIV-1 seroconversion during pregnancy resulting in vertical transmission. J.Clin.Virol. 2008, 41:152-153.
    Mbisa JL, Delviks-Frankenberry KA, Thomas JA, Gorelick RJ, Pathak VK. Real-Time PCR Analysis of HIV-1 Replication Post-entry Events. Methods Mol Biol. 2009, 485:55-72.
  5. Myers RE and Pillay D. Analysis of natural sequence variation and covariation in human immunodeficiency virus type 1 integrase. J.Virol. 2008, 82:9228-9235.
    Cane P.A., Kaye S., Smit E., Tilston P., Kirk S., Shepherd J., Hopkins M., Zhang H.,  & Geretti A.M.. Genotypic antiretroviral drug resistance testing at low plasma HIV-1 RNA loads in the UK.  HIV Medicine. 2008, 9:673-6.
  6. Buckton A.J., Bissett S.L., Myers R.E., Beddows S., Cane P.A., Pillay D. Development and optimization of an internally controlled dried blood spot assay for surveillance of human immunodeficiency virus type-1 drug resistance.  J Antimicrob Chemother  2008, 62: 1191-8.
  7. Margerison E.S., Maguire M., Pillay D., Cane P., Elston R.C. The HIV-1 Protease Substitution K55R: A Protease Inhibitor Associated Substitution Involved in Restoring Viral Replication. JAC. 2008, 61:786-791
  8. Freshwater D.A., Dudley T., Cane P., & Mutimer D.J. Viral persistence after liver transplantation for hepatitis B virus: a cross-sectional study.  Transplantation. 2008, 85:1105-1111.
  9. Soriano V, Geretti AM, Perno CF, Fätkenheuer G, Pillay D, Reynes J, Tambussi G, Calvez V, Alcamí J, Rockstroh J.  Optimal use of maraviroc in clinical practice. AIDS. 2008, 22:2231-40.
  10. Dunn D, Geretti AM, Green H, Fearnhill E, Pozniak A, Churchill D, Pillay D, Sabin C, Phillips A; UK Collaborative Group on HIV Drug Resistance; UK Collaborative HIV Cohort Study.  Population trends in the prevalence and patterns of protease resistance related to exposure to unboosted and boosted protease inhibitors. Antivir Ther. 2008,13:771-7.
  11. Brown AE, Murphy G, Rinck G, Clewley JP, Hill C, Parry JV, Johnson AM, Pillay D, Gill N.  Implications for HIV testing policy derived from combining data on voluntary confidential testing with viral sequences and serological analyses. Sex Transm Infect. 2008, Oct 27.
  12. Deforche K, Camacho RJ, Grossman Z, Soares MA, Van Laethem K, Katzenstein DA, Harrigan PR, Kantor R, Shafer R, Vandamme AM; non-B Workgroup.  Bayesian network analyses of resistance pathways against efavirenz and nevirapine.  AIDS. 2008, 22:2107-15.
  13. Stöhr W, Back D, Dunn D, Sabin C, Winston A, Gilson R, Pillay D, Hill T, Ainsworth J, Pozniak A, Leen C, Bansi L, Fisher M, Orkin C, Anderson J, Johnson M, Easterbrook P, Gibbons S, Khoo S; Liverpool TDM Database; UK CHIC Study.  Factors influencing efavirenz and nevirapine plasma concentration: effect of ethnicity, weight and co-medication. Antivir Ther. 2008.13:675-85.
  14. Green H, Tilston P, Fearnhill E, Pillay D, Dunn DT; UK Collaborative Group on HIV Drug Resistance. The impact of different definitions on the estimated rate of transmitted HIV drug resistance in the United Kingdom. J Acquir Immune Defic Syndr. 2008. 49:196-204.
  15. Buckton AJ. New methods for the surveillance of HIV drug resistance in the resource poor world.  Curr Opin Infect Dis. 2008 21:653-8.
  16. Nokes JD, Cane PA. New strategies for control of respiratory syncytial virus infection.
    Curr Opin Infect Dis. 2008, 21:639-43.
  17. Perry KR, Ramskill S, Eglin RP, Barbara JA, Parry JV.  Improvement in the performance of HIV screening kits.  Transfus Med. 2008 18:228-40.
  18. Murphy G, Parry JV.  Assays for the detection of recent infections with human immunodeficiency virus type 1.  Euro Surveill. 2008, 13. pii: 18966.
  19. Sudarshi D, Pao D, Murphy G, Parry J, Dean G, Fisher M. Missed opportunities for diagnosing primary HIV infection. Sex Transm Infect. 2008, 84:14-16.
  20. Pantazis N, Touloumi G, Vanhems P, Gill J, Bucher HC, Porter K; CASCADE Collaboration. The effect of antiretroviral treatment of different durations in primary HIV infection.  AIDS. 2008, 22:2441-50.
  21. Jarrin I, Geskus R, Bhaskaran K, Prins M, Perez-Hoyos S, Muga R, Hernández-Aguado I, Meyer L, Porter K, del Amo J; CASCADE Collaboration.  Gender differences in HIV progression to AIDS and death in industrialized countries: slower disease progression following HIV seroconversion in women.  Am J Epidemiol. 2008, 168: 532-40.
    Bhaskaran K, Hamouda O, Sannes M, Boufassa F, Johnson AM, Lambert PC, Porter K; CASCADE Collaboration. Changes in the risk of death after HIV seroconversion compared with mortality in the general population. JAMA. 2008, 300:51-9
  22. Turner CG, Cohen CE, Sabin CA, Tosswill JH, Best JM, Taylor GP, de Ruiter A, Barlow D, Smith NA. The seroepidemiology of HTLV-I amongst genitourinary medicine (GUM) attendees in South East London.  J Clin Virol. 2008 43:253-4
  23. Damond F, Benard A, Ruelle J, Alabi A, Kupfer B, Gomes P, Rodes B, Albert J, Böni J, Garson J, Ferns B, Matheron S, Chene G, Brun-Vezinet F; ACHIEV2E Collaboration on HIV-2 Infection Study Group. Quality control assessment of human immunodeficiency virus type 2 (HIV-2) viral load quantification assays: results from an international collaboration on HIV-2 infection in 2006. J Clin Microbiol. 2008 46:2088-91.
  24. Okiro EA, Ngama M, Bett A. Cane PA, Medley GF, & Nokes DJ.  Factors associated with increased risk of progression to respiratory syncytial virus-associated pneumonia in young Kenyan children. Trop Med & Int Health 2008. 13:1-13.
  25. Okiro EA, Sande C, Mutunga M, Medley GF, Cane PA, & Nokes DJ. Identifying infections with respiratory syncytial virus using specific IgG and IgA ELISAs on oral-fluid samples. J Clin Microbiol. 2008 46:1659-1662.

Last reviewed: 13 November 2009